MPD: Phenotype measures mapped to MA:0002405, postnatal mouse

Phenotype measures in Farmer1 associated with ontology term
MA:0002405 'postnatal mouse'

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All measures in this list are mapped to the ontology descendants of MA:0002405. None are mapped to MA:0002405 directly.

MA:0000059 blood
MA:0000141 spleen
MA:0000335 colon
MA:0002502 serum
MA:0002509 feces
MA:0002829 mesenteric lymph node

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	Sex	Age	Sample Size (Avg)	Year
Farmer1:1	Farmer1	histopathology	(none)	severity of lesions in cecum [score] CecumSeverity 11301	QTL population	both	6wks	N=206	2001

Farmer1:2	Farmer1	histopathology	(none)	hyperplasia of cecum [score] CecumHyperplasia 11302	QTL population	both	6wks	N=206	2001

Farmer1:3	Farmer1	histopathology	(none)	ulceration in cecum [score] CecumUlceration 11303	QTL population	both	6wks	N=206	2001

Farmer1:4	Farmer1	histopathology	(none)	percentage of cecum damaged area [%] CecumDA 11304	QTL population	both	6wks	N=206	2001

Farmer1:5	Farmer1	histopathology	(none)	sum of cecum severity, hyperplasia, ulceration and damaged area scores [score] CecumTotalScore 11305	QTL population	both	6wks	N=206	2001

Farmer1:6	Farmer1	histopathology	(none)	percentage of proximal colon damaged area [%] ProxDA 11306	QTL population	both	6wks	N=206	2001

Farmer1:7	Farmer1	histopathology	(none)	severity of lesions in proximal colon [score] ProxSeverity 11307	QTL population	both	6wks	N=206	2001

Farmer1:8	Farmer1	histopathology	(none)	hyperplasia of proximal colon [score] ProxHyperplasia 11308	QTL population	both	6wks	N=206	2001

Farmer1:9	Farmer1	histopathology	(none)	ulceration in proximal colon [score] ProxUlceration 11309	QTL population	both	6wks	N=206	2001

Farmer1:10	Farmer1	histopathology	(none)	percentage of damaged area in mid colon [%] MidDA 11310	QTL population	both	6wks	N=206	2001

Farmer1:11	Farmer1	histopathology	(none)	severity of lesions in mid colon [score] MidSeverity 11311	QTL population	both	6wks	N=206	2001

Farmer1:12	Farmer1	histopathology	(none)	hyperplasia of mid colon [score] MidHyperplasia 11312	QTL population	both	6wks	N=206	2001

Farmer1:13	Farmer1	histopathology	(none)	ulcers and crypts frequency score [score] MidUlceration 11313	QTL population	both	6wks	N=206	2001

Farmer1:14	Farmer1	histopathology	(none)	percentage of damaged area in distal colon [%] DistalDA 11314	QTL population	both	6wks	N=206	2001

Farmer1:15	Farmer1	histopathology	(none)	severity of lesions in distal colon [score] DistalSeverity 11315	QTL population	both	6wks	N=206	2001

Farmer1:16	Farmer1	histopathology	(none)	hyperplasia of distal colon [score] DistalHyperplasia 11316	QTL population	both	6wks	N=206	2001

Farmer1:17	Farmer1	histopathology	(none)	ulceration in distal colon [score] DistalUlceration 11317	QTL population	both	6wks	N=206	2001

Farmer1:18	Farmer1	histopathology	(none)	proximal colon score [score] ProximalColon 11318	QTL population	both	6wks	N=206	2001

Farmer1:19	Farmer1	histopathology	(none)	middle colon score [score] MiddleColon 11319	QTL population	both	6wks	N=206	2001

Farmer1:20	Farmer1	histopathology	(none)	distal colon score [score] DistalColon 11320	QTL population	both	6wks	N=206	2001

Farmer1:21	Farmer1	histopathology	(none)	total score [score] ColonTotalScore 11321	QTL population	both	6wks	N=206	2001

Farmer1:23	Farmer1	organ weights	(none)	spleen weight [g] SpleenWeight 11323	QTL population	both	6wks	N=206	2001

Farmer1:24	Farmer1	organ weights	(none)	spleen/body weight ratio [%] SplBW 11324	QTL population	both	6wks	N=206	2001

Farmer1:25	Farmer1	organ weights	(none)	mesenteric lymph node (MLN) weight [g] MLNWeight 11325	QTL population	both	6wks	N=206	2001

Farmer1:26	Farmer1	organ weights	(none)	MLN/body weight ratio [%] MLNBW 11326	QTL population	both	6wks	N=206	2001

Farmer1:27	Farmer1	health assessment	(none)	diarrhea grade [score] Diarrhea 11327	QTL population	both	6wks	N=206	2001

Farmer1:28	Farmer1	microscopy	(none)	blood in feces [score] Color 11328	QTL population	both	6wks	N=206	2001

Farmer1:29	Farmer1	hormone quantification	(none)	lgG2a antibodies against escherichia coli membrane antigens [ng/ml] IgG2aantiECM 11329	QTL population	both	6wks	N=206	2001

Farmer1:30	Farmer1	hormone quantification	(none)	levels of total lgG reactivity against escherichia coli membrane (ECM) antigens [ng/ml] IgGantiECM 11330	QTL population	both	6wks	N=206	2001

Farmer1:31	Farmer1	hormone quantification	(none)	secretory IgA in collected blood [ng/ml] IgA 11331	QTL population	both	6wks	N=206	2001

Farmer1:32	Farmer1	hormone quantification	(none)	levels of IgA secreted in feces [ng/ml] IgAfeces 11332	QTL population	both	6wks	N=206	2001

Farmer1:33	Farmer1	immune cell quantification	(none)	percentage of Interleukin 12 in collected blood [%] IL12 11333	QTL population	both	6wks	N=206	2001

Farmer1:34	Farmer1	immune cell quantification	(none)	percentage of viable CD4⁺ T cells in 150 µl collected blood [%] CD4 11334	QTL population	both	6wks	N=206	2001

Farmer1:35	Farmer1	immune cell quantification	(none)	percentage of viable CD8⁺ T cells in 150 µl collected blood [%] CD8 11335	QTL population	both	6wks	N=206	2001

Farmer1:36	Farmer1	immune cell quantification	(none)	percentage of viable B220⁺ B cells in 150 µl collected blood [%] B220 11336	QTL population	both	6wks	N=206	2001

Farmer1:37	Farmer1	immune cell quantification	(none)	percentage of viable IgM⁺ B cells in 150 µl collected blood [%] lgM 11337	QTL population	both	6wks	N=206	2001

Farmer1:38	Farmer1	immune cell quantification	(none)	percentage of macrophages in 150 µl collected blood [%] Macrophages 11338	QTL population	both	6wks	N=206	2001

Farmer1:39	Farmer1	immune cell quantification	(none)	percentage of viable granulocytes in 150 µl collected blood [%] Granulocytes 11339	QTL population	both	6wks	N=206	2001

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