Project measure / variable:   GMC03   defecation

ID, description, units MPD:55221   defecation   defecation (0=present, 1=absent)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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GMC03 - defecation (0=present, 1=absent)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.0139   score 0.0312   score
Median of the strain means0   score 0   score
SD of the strain means± 0.0392 ± 0.0884
Coefficient of variation (CV)2.83 2.83
Min–max range of strain means0   –   0.111   score 0   –   0.250   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0158 0.0158 0.8589 0.3549
strain 7 0.9327 0.1332 7.2509 < 0.0001
sex:strain 7 0.1433 0.0205 1.1141 0.3545
Residuals 260 4.7778 0.0184


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   16 0.0 0.0 -0.35
129S1/SvImJ m 0.0 0.0   16 0.0 0.0 -0.35
A/J f 0.0 0.0   16 0.0 0.0 -0.35
A/J m 0.0 0.0   16 0.0 0.0 -0.35
C57BL/6J f 0.0 0.0   16 0.0 0.0 -0.35
C57BL/6J m 0.0 0.0   16 0.0 0.0 -0.35
CAST/EiJ f 0.0 0.0   19 0.0 0.0 -0.35
CAST/EiJ m 0.0 0.0   17 0.0 0.0 -0.35
NOD/ShiLtJ f 0.0 0.0   18 0.0 0.0 -0.35
NOD/ShiLtJ m 0.0 0.0   16 0.0 0.0 -0.35
NZO/HlLtJ f 0.0 0.0   17 0.0 0.0 -0.35
NZO/HlLtJ m 0.0 0.0   17 0.0 0.0 -0.35
PWK/PhJ f 0.0 0.0   20 0.0 0.0 -0.35
PWK/PhJ m 0.0 0.0   22 0.0 0.0 -0.35
WSB/EiJ f 0.111 0.323   18 0.0762 2.91 2.47
WSB/EiJ m 0.25 0.447   16 0.112 1.79 2.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0339 0.0667 -0.0667
129S1/SvImJ m 0.0 0.0339 0.0667 -0.0667
A/J f 0.0 0.0339 0.0667 -0.0667
A/J m 0.0 0.0339 0.0667 -0.0667
C57BL/6J f 0.0 0.0339 0.0667 -0.0667
C57BL/6J m 0.0 0.0339 0.0667 -0.0667
CAST/EiJ f 0.0 0.0311 0.0612 -0.0612
CAST/EiJ m 0.0 0.0329 0.0647 -0.0647
NOD/ShiLtJ f 0.0 0.032 0.0629 -0.0629
NOD/ShiLtJ m 0.0 0.0339 0.0667 -0.0667
NZO/HlLtJ f 0.0 0.0329 0.0647 -0.0647
NZO/HlLtJ m 0.0 0.0329 0.0647 -0.0647
PWK/PhJ f 0.0 0.0303 0.0597 -0.0597
PWK/PhJ m 0.0 0.0289 0.0569 -0.0569
WSB/EiJ f 0.1111 0.032 0.174 0.0482
WSB/EiJ m 0.25 0.0339 0.3167 0.1833


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.024 0.0472 -0.0472
A/J both 0.0 0.024 0.0472 -0.0472
C57BL/6J both 0.0 0.024 0.0472 -0.0472
CAST/EiJ both 0.0 0.0226 0.0446 -0.0446
NOD/ShiLtJ both 0.0 0.0233 0.0459 -0.0459
NZO/HlLtJ both 0.0 0.0232 0.0458 -0.0458
PWK/PhJ both 0.0 0.0209 0.0412 -0.0412
WSB/EiJ both 0.1806 0.0233 0.2264 0.1347




  GWAS USING LINEAR MIXED MODELS