Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 9:65808962-66145015

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75 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Vmbic5 9 57684209 to 65923895 8239686 QTL ventral midbrain iron content 5
Zfp609 9 65692391 to 65827564 135173 - protein coding gene zinc finger protein 609
Cpgi21957 9 65826968 to 65828211 1243 CpG island CpG island 21957
Tssr90219 9 65827544 to 65827576 32 - TSS region transcription start site region 90219
Tssr90220 9 65827667 to 65827696 29 - TSS region transcription start site region 90220
Tssr90221 9 65827707 to 65827740 33 - TSS region transcription start site region 90221
Trip4 9 65828930 to 65908794 79864 - protein coding gene thyroid hormone receptor interactor 4
Gm30314 9 65832116 to 65841198 9082 + lncRNA gene predicted gene, 30314
n-R5s85 9 65836353 to 65836465 112 + rRNA gene nuclear encoded rRNA 5S 85
Gm16073 9 65838167 to 65838683 516 + pseudogene predicted gene 16073
Cpgi21958 9 65884860 to 65885289 429 CpG island CpG island 21958
Tssr90222 9 65885024 to 65885069 45 - TSS region transcription start site region 90222
Tssr90223 9 65885076 to 65885091 15 - TSS region transcription start site region 90223
Tssr90224 9 65885106 to 65885117 11 - TSS region transcription start site region 90224
Cpgi21959 9 65890177 to 65890358 181 CpG island CpG island 21959
Pclaf 9 65890237 to 65903266 13029 + protein coding gene PCNA clamp associated factor
Tssr85728 9 65890291 to 65890343 52 + TSS region transcription start site region 85728
Tssr85729 9 65890344 to 65890358 14 + TSS region transcription start site region 85729
Tssr85730 9 65890524 to 65890538 14 + TSS region transcription start site region 85730
D030028M11Rik 9 65895921 to 65898262 2341 unclassified gene RIKEN cDNA D030028M11 gene
Tssr85731 9 65896433 to 65896468 35 + TSS region transcription start site region 85731
Gm23248 9 65900201 to 65900308 107 + snRNA gene predicted gene, 23248
Tssr85732 9 65903097 to 65903102 5 + TSS region transcription start site region 85732
Cpgi21960 9 65908776 to 65909824 1048 CpG island CpG island 21960
Tssr90225 9 65908779 to 65908798 19 - TSS region transcription start site region 90225
Tssr90226 9 65908800 to 65908833 33 - TSS region transcription start site region 90226
Csnk1g1 9 65908962 to 66045015 136053 + protein coding gene casein kinase 1, gamma 1
Tssr85733 9 65908967 to 65909019 52 + TSS region transcription start site region 85733
Tssr85734 9 65909023 to 65909083 60 + TSS region transcription start site region 85734
Tssr85735 9 65909090 to 65909101 11 + TSS region transcription start site region 85735
Tssr85736 9 65914330 to 65914331 1 + TSS region transcription start site region 85736
Cd4ts4 9 65923774 to 65923895 121 QTL CD4 T cell subset 4
D9Mit104 9 65923774 to 65923895 121 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 104
Pgia5 9 65923774 to 65923895 121 QTL proteoglycan induced arthritis 5
Smgd1 9 65923774 to 86695914 20772140 QTL submucosal gland distribution 1
Tssr85737 9 65924178 to 65924198 20 + TSS region transcription start site region 85737
Tssr85738 9 65924207 to 65924216 9 + TSS region transcription start site region 85738
Gm22657 9 65952314 to 65952445 131 - snoRNA gene predicted gene, 22657
Tssr85739 9 65965937 to 65965940 3 + TSS region transcription start site region 85739
D9Dcr3 9 65986191 to 65986295 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 3
Tssr85740 9 66004654 to 66004688 34 + TSS region transcription start site region 85740
Tssr85741 9 66032507 to 66032511 4 + TSS region transcription start site region 85741
Tssr85742 9 66040472 to 66040499 27 + TSS region transcription start site region 85742
Cpgi21961 9 66059753 to 66060674 921 CpG island CpG island 21961
Tssr90227 9 66059938 to 66059969 31 - TSS region transcription start site region 90227
Tssr85743 9 66060098 to 66060109 11 + TSS region transcription start site region 85743
Tssr2919 9 66060127 to 66060138 11 + TSS region transcription start site region 2919
Tssr2920 9 66060179 to 66060186 7 + TSS region transcription start site region 2920
Tssr85744 9 66060195 to 66060273 78 + TSS region transcription start site region 85744
Ppib 9 66060222 to 66066623 6401 + protein coding gene peptidylprolyl isomerase B
Tssr85745 9 66061360 to 66061380 20 + TSS region transcription start site region 85745
Snx22 9 66065176 to 66069719 4543 - protein coding gene sorting nexin 22
Cpgi21962 9 66068908 to 66069924 1016 CpG island CpG island 21962
Tssr90228 9 66069702 to 66069741 39 - TSS region transcription start site region 90228
Tssr90229 9 66069743 to 66069772 29 - TSS region transcription start site region 90229
Snx1 9 66088127 to 66124886 36759 - protein coding gene sorting nexin 1
Tssr90230 9 66093578 to 66093588 10 - TSS region transcription start site region 90230
Tssr90231 9 66094106 to 66094116 10 - TSS region transcription start site region 90231
Tssr90232 9 66096179 to 66096183 4 - TSS region transcription start site region 90232
Cpgi21963 9 66124405 to 66124987 582 CpG island CpG island 21963
Tssr90233 9 66124709 to 66124720 11 - TSS region transcription start site region 90233
Tssr90234 9 66124761 to 66124805 44 - TSS region transcription start site region 90234
Tssr90235 9 66124824 to 66124846 22 - TSS region transcription start site region 90235
Tssr90236 9 66124851 to 66124871 20 - TSS region transcription start site region 90236
Tssr90237 9 66124872 to 66124883 11 - TSS region transcription start site region 90237
Tssr90238 9 66126473 to 66126487 14 - TSS region transcription start site region 90238
Cpgi21964 9 66126489 to 66126857 368 CpG island CpG island 21964
Tssr90239 9 66126559 to 66126603 44 - TSS region transcription start site region 90239
Ciao2a 9 66126611 to 66138955 12344 + protein coding gene cytosolic iron-sulfur assembly component 2A
Tssr85746 9 66126637 to 66126649 12 + TSS region transcription start site region 85746
Tssr85747 9 66126655 to 66126722 67 + TSS region transcription start site region 85747
Tssr85748 9 66126727 to 66126744 17 + TSS region transcription start site region 85748
Tssr85749 9 66126753 to 66126781 28 + TSS region transcription start site region 85749
Tssr85750 9 66126798 to 66126832 34 + TSS region transcription start site region 85750