Alghamdi SM, Sundberg BA, Sundberg JP, Schofield PN, Hoehndorf R. Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies.
Sci Rep. 2019 Mar 11;9(1):4025. doi: 10.1038/s41598-019-40368-1.
An JY. Targeting mTOR to Reverse Age-Associated Periodontal Disease. 2019. Dissertation, University of Washington.
Anshev AS. Small intestine acetylcholinesterase activity in experimental animals exposed to low doses of ionizing radiation. Journal of Education, Health and Sport. 2020;10(4):373-380.
Antunes KH, Fachi JL, de Paula R, da Silva EF, Pral LP, Dos Santos AÁ, Dias GBM, Vargas JE, Puga R, Mayer FQ, Maito F, Zárate-Bladés CR, Ajami NJ, Sant'Ana MR, Candreva T, Rodrigues HG, Schmiele M, Silva Clerici MTP, Proença-Modena JL, Vieira AT, Mackay CR, Mansur D, Caballero MT, Marzec J, Li J, Wang X, Bell D, Polack FP, Kleeberger SR, Stein RT, Vinolo MAR, de Souza APD. Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response.
Nat Commun. 2019 Jul 22;10(1):3273. doi: 10.1038/s41467-019-11152-6.
Aravani D, Kassi E, Chatzigeorgiou A, Vakrou S. Cardiometabolic Syndrome: An Update on Available Mouse Models.
Thromb Haemost. 2021 Jun;121(6):703-715. doi: 10.1055/s-0040-1721388. Epub 2020 Dec 6.
Arora UP, Charlebois C, Lawal RA, Dumont BL. Population and subspecies diversity at mouse centromere satellites.
BMC Genomics. 2021 Apr 17;22(1):279. doi: 10.1186/s12864-021-07591-5.
Arranz-Nicolás J, Martin-Salgado M, Adán-Barrientos I, Liébana R, Del Carmen Moreno-Ortíz M, Leitner J, Steinberger P, Ávila-Flores A, Merida I. Diacylglycerol kinase α inhibition cooperates with PD-1-targeted therapies to restore the T cell activation program.
Cancer Immunol Immunother. doi: 10.1007/s00262-021-02924-5.
Arslan A, Guan Y, Fang Z, Chen X, Donaldson R, Zhu W, Ford M, Wu M, Zheng M, Dill DL, Peltz G. High Throughput Computational Mouse Genetic Analysis bioRxiv doi: https://doi.org/10.1101/2020.09.01.278465.
Arumugam P, Suzuki T, Shima K, McCarthy C, Sallese A, Wessendarp M, Ma Y, Meyer J, Black D, Chalk C, Carey B, Lachmann N, Moritz T, Trapnell BC. Long-Term Safety and Efficacy of Gene-Pulmonary Macrophage Transplantation Therapy of PAP in Csf2ra-/- Mice.
Mol Ther. 2019 Sep 4;27(9):1597-1611. doi: 10.1016/j.ymthe.2019.06.010. Epub 2019 Jul 2.
Ashbrook DG, Arends D, Prins P, Mulligan MK, Roy S, Williams EG, Lutz CM, Valenzuela A, Bohl CJ, Ingels JF, McCarty MS, Centeno AG, Hager R, Auwerx J, Lu L, Williams RW. A platform for experimental precision medicine: The extended BXD mouse family.
Cell Syst. 2021 Mar 17;12(3):235-247.e9. doi: 10.1016/j.cels.2020.12.002. Epub 2021 Jan 19.
Avchaciov K, Antoch MP, Andrianova EL, Tarkhov AE, Menshikov LI, Burmistrova O, Gudkov AV, Fedichev PO. Identification of a blood test-based biomarker of aging through deep learning of aging trajectories in large phenotypic datasets of mice. bioRxiv doi: https://doi.org/10.1101/2020.01.23.917286
Axelrad DA, Setzer RW, Bateson TF, DeVito M, Dzubow RC, Fitzpatrick JW, Frame AM, Hogan KA, Houck K, Stewart M. Methods for evaluating variability in human health dose-response characterization.
Hum Ecol Risk Assess. 2019 Nov 6;25:1-24. doi: 10.1080/10807039.2019.1615828.
Bailey LS, Bagley JR, Dodd R, Olson A, Bolduc M, Philip VM, Reinholdt LG, Sukoff Rizzo SJ, Gagnon L, Chesler EJ, Jentsch JD. Heritable variation in locomotion, reward sensitivity and impulsive behaviors in a genetically diverse inbred mouse panel. 2021. bioRxiv doi: https://doi.org/10.1101/2021.04.06.438678
Bale MR, Bitzidou M, Giusto E, Kinghorn P, Maravall M. Sequence Learning Induces Selectivity to Multiple Task Parameters in Mouse Somatosensory Cortex.
Curr Biol. 2021 Feb 8;31(3):473-485.e5. doi: 10.1016/j.cub.2020.10.059. Epub 2020 Nov 12.
Bein K, Ganguly K, Martin TM, Concel VJ, Brant KA, Di YPP, Upadhyay S, Fabisiak JP, Vuga LJ, Kaminski N, Kostem E, Eskin E, Prows DR, Jang AS, Leikauf GD. Genetic determinants of ammonia-induced acute lung injury in mice.
Am J Physiol Lung Cell Mol Physiol. 2021 Jan 1;320(1):L41-L62. doi: 10.1152/ajplung.00276.2020. Epub 2020 Oct 14.
Benavides F, Rülicke T, Prins JB, Bussell J, Scavizzi F, Cinelli P, Herault Y, Wedekind D. Genetic quality assurance and genetic monitoring of laboratory mice and rats: FELASA Working Group Report.
Lab Anim. 2020 Apr;54(2):135-148. doi: 10.1177/0023677219867719. Epub 2019 Aug 20.
Beraldo FH, Palmer D, Memar S, Wasserman DI, Lee WV, Liang S, Creighton SD, Kolisnyk B, Cowan MF, Mels J, Masood TS, Fodor C, Al-Onaizi MA, Bartha R, Gee T, Saksida LM, Bussey TJ, Strother SS, Prado VF, Winters BD, Prado MA. MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment.
Elife. pii: e49630. doi: 10.7554/eLife.49630.
Biagosch CA, Vidali S, Faerberboeck M, Hensler SV, Becker L, Amarie OV, Aguilar-Pimentel A, Garrett L, Klein-Rodewald T, Rathkolb B, Zanuttigh E, Calzada-Wack J, da Silva-Buttkus P, Rozman J, Treise I, Fuchs H, Gailus-Durner V, de Angelis MH, Janik D, Wurst W, Mayr JA, Klopstock T, Meitinger T, Prokisch H, Iuso A. A comprehensive phenotypic characterization of a whole-body Wdr45 knock-out mouse.
Mamm Genome. doi: 10.1007/s00335-021-09875-3.
Bissahoyo AC, Xie Y, Yang L, Pearsall RS, Lee D, Elliott RW, Demant P, McMillan L, Pardo-Manuel de Villena F, Angel JM, Threadgill DW. A New Polygenic Model for Nonfamilial Colorectal Cancer Inheritance Based on the Genetic Architecture of the Azoxymethane-Induced Mouse Model.
Genetics. 2020 Mar;214(3):691-702. doi: 10.1534/genetics.119.302833. Epub 2019 Dec 26.
Blake JA, Baldarelli R, Kadin JA, Richardson JE, Smith CL, Bult CJ, Mouse Genome Database Group.. Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology.
Nucleic Acids Res. 2021 Jan 8;49(D1):D981-D987. doi: 10.1093/nar/gkaa1083.
Boehm FJ, Chesler EJ, Yandell BS, Broman KW. Testing Pleiotropy vs. Separate QTL in Multiparental Populations.
G3 (Bethesda). 2019 Jul 9;9(7):2317-2324. doi: 10.1534/g3.119.400098.
Breznik JA, Schulz C, Ma J, Sloboda DM, Bowdish DME. Biological sex, not reproductive cycle, influences peripheral blood immune cell prevalence in mice.
J Physiol. 2021 Apr;599(8):2169-2195. doi: 10.1113/JP280637. Epub 2021 Jan 17.
Bult CJ, Blake JA, Smith CL, Kadin JA, Richardson JE; Mouse Genome Database Group. Mouse Genome Database (MGD) 2019.
Nucleic Acids Res. 2019 Jan 8;47(D1):D801-D806. doi: 10.1093/nar/gky1056.
Castaneda M, Smith KM, Nixon JC, Hernandez CJ, Rowan S. Alterations to the gut microbiome impair bone tissue strength in aged mice.
Bone Rep. 2021 Jun;14:101065. doi: 10.1016/j.bonr.2021.101065. Epub 2021 Apr 8.
Castillo-Ruiz A, Hite TA, Yakout DW, Rosen TJ, Forger NG. Does Birth Trigger Cell Death in the Developing Brain?
eNeuro. pii: ENEURO.0517-19.2020. doi: 10.1523/ENEURO.0517-19.2020. Epub 2020 Feb 14.
Chandra PK, Datta A, Mondal D. Development of mouse models for cancer research. 2020. In Animal Biotechnology (Second Edition) Models in Discovery and Translation, pp. 77-102. Academic Press.
Chiang CY, Ching YH, Chang TY, Hu LS, Yong YS, Keak PY, Mustika I, Lin MD, Liao BY. Novel eye genes systematically discovered through an integrated analysis of mouse transcriptomes and phenome.
Comput Struct Biotechnol J. 2020;18:73-82. doi: 10.1016/j.csbj.2019.12.009. Epub 2019 Dec 27.
Clough B, Finethy R, Khan RT, Fisch D, Jordan S, Patel H, Coers J, Frickel EM. C57BL/6 and 129 inbred mouse strains differ in Gbp2 and Gbp2b expression in response to inflammatory stimuli in vivo.
Wellcome Open Res. 2019;4:124. doi: 10.12688/wellcomeopenres.15329.1. Epub 2019 Aug 20.
Cooley CR, McLain JM, Dupuy SD, Eder AE, Wintenberg M, Kelly-Wintenberg K, Wintenberg A, Collier JJ, Burke SJ, Karlstad MD. Indirect, Non-Thermal Atmospheric Plasma Promotes Bacterial Killing in vitro and Wound Disinfection in vivo Using Monogenic and Polygenic Models of Type 2 Diabetes (Without Adverse Metabolic Complications).
Shock. 2020 Nov;54(5):681-687. doi: 10.1097/SHK.0000000000001583.
Cooper TK, Silva KA, Kennedy VE, Alghamdi S, Hoehndorf R, Sundberg BA, Schofield PN, Sundberg JP. Hyaline Arteriolosclerosis in 30 Strains of Aged Inbred Mice.
Vet Pathol. 2019 Sep;56(5):799-806. doi: 10.1177/0300985819844822. Epub 2019 May 6.
Datta U, Schoenrock SE, Bubier JA, Bogue MA, Jentsch JD, Logan RW, Tarantino LM, Chesler EJ. Prospects for finding the mechanisms of sex differences in addiction with human and model organism genetic analysis.
Genes Brain Behav. 2020 Mar;19(3):e12645. doi: 10.1111/gbb.12645. Epub 2020 Feb 11.
Denroche HC, Miard S, Sallé-Lefort S, Picard F, Verchere CB. T cells accumulate in non-diabetic islets during ageing.
Immun Ageing. 2021 Feb 23;18(1):8. doi: 10.1186/s12979-021-00221-4.
Deshycka R, Sudaryo V, Huang N-J, Xie Y, Smeding LY, Choi MK, Ploegh HL, Lodish HF, Pishesha N. Engineered Red Blood Cells Carrying PCSK9 Inhibitors Persistently Lower LDL and Prevent Obesity. 2020. bioRxiv doi: https://doi.org/10.1101/2020.11.02.364620
Ding Y, Vanselow DJ, Yakovlev MA, Katz SR, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, La Riviere P, Cheng KC. Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography.
Elife. pii: e44898. doi: 10.7554/eLife.44898.
Dobrinskikh E, Estrella AM, Hennessy CE, Hara N, Schwarz MI, Kurche JS, Yang IV, Schwartz DA. Genes, other than Muc5b, play a role in bleomycin-induced lung fibrosis.
Am J Physiol Lung Cell Mol Physiol. 2021 Aug 1;321(2):L440-L450. doi: 10.1152/ajplung.00615.2020. Epub 2021 Jun 23.
Dumont BL. Significant Strain Variation in the Mutation Spectra of Inbred Laboratory Mice.
Mol Biol Evol. 2019 May 1;36(5):865-874. doi: 10.1093/molbev/msz026.
Dunn AR, O'Connell KMS, Kaczorowski CC. Gene-by-environment interactions in Alzheimer's disease and Parkinson's disease.
Neurosci Biobehav Rev. 2019 Aug;103:73-80. doi: 10.1016/j.neubiorev.2019.06.018. Epub 2019 Jun 14.
Edmondson EF, Gatti DM, Ray FA, Garcia EL, Fallgren CM, Kamstock DA, Weil MM. Genomic mapping in outbred mice reveals overlap in genetic susceptibility for HZE ion- and γ-ray-induced tumors.
Sci Adv. 2020 Apr;6(16):eaax5940. doi: 10.1126/sciadv.aax5940. Epub 2020 Apr 15.
Edmondson EF, Hsieh WT, Kramer JA, Breed MW, Roelke-Parker ME, Stephens-Devalle J, Pate NM, Bassel LL, Hollingshead MG, Karim BO, Butcher DO, Warner AC, Nagashima K, Gulani J. Naturally Acquired Mouse Kidney Parvovirus Infection Produces a Persistent Interstitial Nephritis in Immunocompetent Laboratory Mice.
Vet Pathol. 2020 Nov;57(6):915-925. doi: 10.1177/0300985820953500. Epub 2020 Oct 5.
Ejima K, Brown AW, Smith DL Jr, Beyaztas U, Allison DB. Murine genetic models of obesity: type I error rates and the power of commonly used analyses as assessed by plasmode-based simulation.
Int J Obes (Lond). 2020 Jun;44(6):1440-1449. doi: 10.1038/s41366-020-0554-2. Epub 2020 Feb 25.
Escobar C, Kao CY, Das S, Papoutsakis ET. Human megakaryocytic microparticles induce de novo platelet biogenesis in a wild-type murine model.
Blood Adv. 2020 Mar 10;4(5):804-814. doi: 10.1182/bloodadvances.2019000753.
Esterly HJ, Crilly CJ, Piszkiewicz S, Shovlin DJ, Pielak GJ, Christian BE. Toxicity and Immunogenicity of a Tardigrade Cytosolic Abundant Heat Soluble Protein in Mice.
Front Pharmacol. 2020;11:565969. doi: 10.3389/fphar.2020.565969. Epub 2020 Oct 7.
Fernández-García S, Sancho-Balsells A, Longueville S, Hervé D, Gruart A, Delgado-García JM, Alberch J, Giralt A. Astrocytic BDNF and TrkB regulate severity and neuronal activity in mouse models of temporal lobe epilepsy.
Cell Death Dis. 2020 Jun 1;11(6):411. doi: 10.1038/s41419-020-2615-9.
Fernandez Lahore G, Raposo B, Lagerquist M, Ohlsson C, Sabatier P, Xu B, Aoun M, James J, Cai X, Zubarev RA, Nandakumar KS, Holmdahl R. Vitamin D3 receptor polymorphisms regulate T cells and T cell-dependent inflammatory diseases.
Proc Natl Acad Sci U S A. 2020 Oct 6;117(40):24986-24997. doi: 10.1073/pnas.2001966117. Epub 2020 Sep 21.
Forsyth D. Canonical Correlation Analysis. In: Applied Machine Learning. Springer (2019).
Fuentes A, Hyde D, Johnson I, Haston CK. Acute Radiation-Induced Hematopoietic Depletion Does Not Alter the Onset or Severity of Pneumonitis in Mice.
Radiat Res. doi: 10.1667/RADE-20-00291.1.
Garrett MR, Korstanje R. Using Genetic and Species Diversity to Tackle Kidney Disease.
Trends Genet. 2020 Jul;36(7):499-509. doi: 10.1016/j.tig.2020.04.001. Epub 2020 Apr 30.
Garrido G, Schrand B, Levay A, Rabasa A, Ferrantella A, Da Silva DM, D'Eramo F, Marijt KA, Zhang Z, Kwon D, Kortylewski M, Kast WM, Dudeja V, van Hall T, Gilboa E. Vaccination against Nonmutated Neoantigens Induced in Recurrent and Future Tumors.
Cancer Immunol Res. 2020 Jul;8(7):856-868. doi: 10.1158/2326-6066.CIR-20-0020. Epub 2020 Apr 15.
Giulietti M, Bastianoni M, Cecati M, Ruzzo A, Bracci M, Malavolta M, Piacenza F, Giacconi R, Piva F. MetaTropismDB: a database of organ-specific metastasis induced by human cancer cell lines in mouse models.
Database (Oxford). pii: baaa100. doi: 10.1093/database/baaa100.
Giusti-Rodríguez P, Xenakis JG, Crowley JJ, Nonneman RJ, DeCristo DM, Ryan A, Quackenbush CR, Miller DR, Shaw GD, Zhabotynsky V, Sullivan PF, Manuel de Villena FP, Zou F. Antipsychotic Behavioral Phenotypes in the Mouse Collaborative Cross Recombinant Inbred Inter-Crosses (RIX).
G3 (Bethesda). 2020 Sep 2;10(9):3165-3177. doi: 10.1534/g3.120.400975.
Goodwin LO, Splinter E, Davis TL, Urban R, He H, Braun RE, Chesler EJ, Kumar V, van Min M, Ndukum J, Philip VM, Reinholdt LG, Svenson K, White JK, Sasner M, Lutz C, Murray SA. Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis.
Genome Res. 2019 Jan 18. pii: gr.233866.117. doi: 10.1101/gr.233866.117. [Epub ahead of print]
Gordon-Larsen P, French JE, Moustaid-Moussa N, Voruganti VS, Mayer-Davis EJ, Bizon CA, Cheng Z, Stewart DA, Easterbrook JW, Shaikh SR. Synergizing Mouse and Human Studies to Understand the Heterogeneity of Obesity.
Adv Nutr. pii: nmab040. doi: 10.1093/advances/nmab040.
Griffin LE, Essenmacher L, Racine KC, Iglesias-Carres L, Tessem JS, Smith SM, Neilson AP. Diet-induced obesity in genetically diverse collaborative cross mouse founder strains reveals diverse phenotype response and amelioration by quercetin treatment in 129S1/SvImJ, PWK/EiJ, CAST/PhJ, and WSB/EiJ mice.
J Nutr Biochem. 2021 Jan;87:108521. doi: 10.1016/j.jnutbio.2020.108521. Epub 2020 Oct 8.
Gu B, Shorter JR, Williams LH, Bell TA, Hock P, Dalton KA, Pan Y, Miller DR, Shaw GD, Philpot BD, Pardo-Manuel de Villena F. Collaborative Cross mice reveal extreme epilepsy phenotypes and genetic loci for seizure susceptibility.
Epilepsia. 2020 Sep;61(9):2010-2021. doi: 10.1111/epi.16617. Epub 2020 Aug 27.
Gururajan A, Reif A, Cryan JF, Slattery DA. The future of rodent models in depression research.
Nat Rev Neurosci. 2019 Nov;20(11):686-701. doi: 10.1038/s41583-019-0221-6. Epub 2019 Oct 2.
Haines BA, Barradale F, Dumont BL. Patterns and Mechanisms of Sex Ratio Distortion in the Collaborative Cross Mouse Mapping Population. bioRxiv doi: https://doi.org/10.1101/2021.06.23.449644
Hasna J, Abi Nahed R, Sergent F, Alfaidy N, Bouron A. The Deletion of TRPC6 Channels Perturbs Iron and Zinc Homeostasis and Pregnancy Outcome in Mice.
Cell Physiol Biochem. 2019;52(3):455-467. doi: 10.33594/000000033. Epub 2019 Mar 15.
Hensel JA, Khattar V, Ashton R, Ponnazhagan S. Characterization of immune cell subtypes in three commonly used mouse strains reveals gender and strain-specific variations.
Lab Invest. 2019 Jan;99(1):93-106. doi: 10.1038/s41374-018-0137-1. Epub 2018 Oct 23.
Hernandez JD, Yu M, Sibilano R, Tsai M, Galli SJ. Development of multiple features of antigen-induced asthma pathology in a new strain of mast cell deficient BALB/c-KitW-sh/W-sh mice.
Lab Invest. 2020 Apr;100(4):516-526. doi: 10.1038/s41374-019-0354-2. Epub 2019 Dec 19.
Hosur V, Skelly DA, Francis C, Low BE, Kohar V, Burzenski LM, Amiji MM, Schulz LM, Wiles MV. Improved mouse models and advanced genetic and genomic technologies for the study of neutrophils. 2020. Drug Discovery Today 25(6): 1013-1025
Iwata S, Nakadai H, Fukushi D, Jose M, Nagahara M, Iwamoto T. Simple and large-scale chromosomal engineering of mouse zygotes via in vitro and in vivo electroporation.
Sci Rep. 2019 Oct 11;9(1):14713. doi: 10.1038/s41598-019-50900-y.
Jan M, Gobet N, Diessler S, Franken P, Xenarios I. A multi-omics digital research object for the genetics of sleep regulation.
Sci Data. 2019 Oct 31;6(1):258. doi: 10.1038/s41597-019-0171-x.
Jena S, Chawla S. The Anatomy and Physiology of Laboratory Mouse. 2021. In: Nagarajan P., Gudde R., Srinivasan R. (eds) Essentials of Laboratory Animal Science: Principles and Practices. Springer.
Josefson, C. Physiological costs of reproduction in female mice. 2020. Dissertation, Auburn University.
Karin O, Agrawal A, Porat Z, Krizhanovsky V, Alon U. Senescent cell turnover slows with age providing an explanation for the Gompertz law.
Nat Commun. 2019 Dec 2;10(1):5495. doi: 10.1038/s41467-019-13192-4.
Kay JC, Claghorn GC, Thompson Z, Hampton TG, Garland T Jr. Electrocardiograms of mice selectively bred for high levels of voluntary exercise: Effects of short-term exercise training and the mini-muscle phenotype.
Physiol Behav. 2019 Feb 1;199:322-332. doi: 10.1016/j.physbeh.2018.11.04Epub 2018 Dec 1.
Keenan BT, Webster JC, Wiemken AS, Lavi-Romer N, Nguyen T, Svenson KL, Galante RJ, Churchill GA, Pickup S, Pack AI, Schwab RJ. Heritability of fat distributions in male mice from the founder strains of the Diversity Outbred mouse population.
G3 (Bethesda). pii: jkab079. doi: 10.1093/g3journal/jkab079.
Kent CF, Tiwari T, Rose S, Patel H, Conflitti IM, Zayed A. Studying the Genetics of Behavior in the Genomics Era. In: Choe, J.C. (Ed.), Encyclopedia of Animal Behavior, (2nd ed.). vol. 2, pp. 223–233. Elsevier, Academic Press.
Kim A, Yonemoto C, Feliciano CP, Shashni B, Nagasaki Y. Antioxidant Nanomedicine Significantly Enhances the Survival Benefit of Radiation Cancer Therapy by Mitigating Oxidative Stress-Induced Side Effects.
Small. 2021 May;17(21):e2008210. doi: 10.1002/smll.202008210. Epub 2021 Apr 15.
König C, Plank AC, Kapp A, Timotius IK, von Hörsten S, Zimmermann K. Thirty Mouse Strain Survey of Voluntary Physical Activity and Energy Expenditure: Influence of Strain, Sex and Day-Night Variation.
Front Neurosci. 2020;14:531. doi: 10.3389/fnins.2020.00531. Epub 2020 Jul 7.
Korstanje R, Peters LL, Robinson LL, Krasinski SD, Churchill GA. The Jackson Laboratory Nathan Shock Center: impact of genetic diversity on aging.
Geroscience. doi: 10.1007/s11357-021-00421-2.
Kruempel JCP, Howington MB, Leiser SF. Computational tools for geroscience.
Transl Med Aging. 2019;3:132-143. doi: 10.1016/j.tma.2019.11.004. Epub 2019 Nov 14.
Kumar Chaudhary M, Rizvi SI. Invertebrate and vertebrate models in aging research.
Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub. 2019 Jun;163(2):114-121. doi: 10.5507/bp.2019.003. Epub 2019 Mar 5.
Kwon SB, Ernst J. Learning a genome-wide score of human-mouse conservation at the functional genomics level.
Nat Commun. 2021 May 3;12(1):2495. doi: 10.1038/s41467-021-22653-8.
Ladner JT, Grubaugh ND, Pybus OG, Andersen KG. Precision epidemiology for infectious disease control.
Nat Med. 2019 Feb;25(2):206-21doi: 10.1038/s41591-019-0345-2. Epub 2019 Feb 6.
Lahue KG, Lara MK, Linton AA, Lavoie B, Fang Q, McGill MM, Crothers JW, Teuscher C, Mawe GM, Tyler AL, Mahoney JM, Krementsov DN. Identification of novel loci controlling inflammatory bowel disease susceptibility utilizing the genetic diversity of wild-derived mice.
Genes Immun. 2020 Nov;21(5):311-325. doi: 10.1038/s41435-020-00110-8. Epub 2020 Aug 26.
Lee HK, Widmayer SJ, Huang MN, Aylor DL, Marchuk DA. Novel Neuroprotective Loci Modulating Ischemic Stroke Volume in Wild-Derived Inbred Mouse Strains.
Genetics. 2019 Nov;213(3):1079-1092. doi: 10.1534/genetics.119.302555. Epub 2019 Sep 5.
Leveille E, Estiar MA, Krohn L, Spiegelman D, Dionne-Laporte A, Dupré N, Trempe JF, Rouleau GA, Gan-Or Z. SPTAN1 variants as a potential cause for autosomal recessive hereditary spastic paraplegia.
J Hum Genet. 2019 Nov;64(11):1145-1151. doi: 10.1038/s10038-019-0669-2. Epub 2019 Sep 12.
Lewis L, Borowa-Mazgaj B, de Conti A, Chappell GA, Luo YS, Bodnar W, Konganti K, Wright FA, Threadgill DW, Chiu WA, Pogribny IP, Rusyn I. Population-Based Analysis of DNA Damage and Epigenetic Effects of 1,3-Butadiene in the Mouse.
Chem Res Toxicol. 2019 May 20;32(5):887-898. doi: 10.1021/acs.chemrestox.9b00035. Epub 2019 Apr 25.
Li H, Auwerx J. Mouse Systems Genetics as a Prelude to Precision Medicine.
Trends Genet. 2020 Apr;36(4):259-272. doi: 10.1016/j.tig.2020.01.004. Epub 2020 Feb 6.
Liu JR, Deng ZH, Zhu XJ, Zeng YR, Guan XX, Li JH. Roles of Nicotinamide N-Methyltransferase in Obesity and Type 2 Diabetes.
Biomed Res Int. 2021;2021:9924314. doi: 10.1155/2021/9924314. Epub 2021 Jul 27.
Luoni M, Giannelli S, Indrigo MT, Niro A, Massimino L, Iannielli A, Passeri L, Russo F, Morabito G, Calamita P, Gregori S, Deverman B, Broccoli V. Whole brain delivery of an instability-prone Mecp2 transgene improves behavioral and molecular pathological defects in mouse models of Rett syndrome.
Elife. pii: e52629. doi: 10.7554/eLife.52629.
Macchiarini F, Miller RA, Strong R, Rosenthal N, Harrison DE. NIA Interventions Testing Program: A collaborative approach for investigating interventions to promote healthy aging. Handbook of the Biology of Aging (Ninth Edition) 2021, Pages 219-235.
Massett MP, Courtney SM, Kim SK, Avila JJ. Contribution of Chromosome 14 to Exercise Capacity and Training Responses in Mice.
Front Physiol. 2019;10:1165. doi: 10.3389/fphys.2019.01165. Epub 2019 Sep 13.
McIntyre C, Saville J, Fuller M. Collection of cerebrospinal fluid from murine lateral ventricles for biomarker determination in mucopolysaccharidosis type IIIA.
J Neurosci Methods. 2019 Aug 1;324:108314. doi: 10.1016/j.jneumeth.2019.108314. Epub 2019 Jun 13.
McMenamin PG, Shields GT, Seyed-Razavi Y, Kalirai H, Insall RH, Machesky LM, Coupland SE. Melanoblasts Populate the Mouse Choroid Earlier in Development Than Previously Described.
Invest Ophthalmol Vis Sci. 2020 Aug 3;61(10):33. doi: 10.1167/iovs.61.10.33.
Mesner LD, Calabrese GM, Al-Barghouthi B, Gatti DM, Sundberg JP, Churchill GA, Godfrey DA, Ackert-Bicknell CL, Farber CR. Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.
PLoS Genet. 2019 May;15(5):e1008123. doi: 10.1371/journal.pgen.1008123. Epub 2019 May 1.
Morello GM, Hultgren J, Capas-Peneda S, Wiltshire M, Thomas A, Wardle-Jones H, Brajon S, Gilbert C, Olsson IAS. High laboratory mouse pre-weaning mortality associated with litter overlap, advanced dam age, small and large litters.
PLoS One. 2020;15(8):e0236290. doi: 10.1371/journal.pone.0236290. Epub 2020 Aug 12.
Munz M, Khodaygani M, Aherrahrou Z, Busch H, Wohlers I. In silico candidate variant and gene identification using inbred mouse strains.
PeerJ. 2021;9:e11017. doi: 10.7717/peerj.11017. Epub 2021 Mar 11.
Nguyen-Yamamoto L, Tanaka KI, St-Arnaud R, Goltzman D. Vitamin D-regulated osteocytic sclerostin and BMP2 modulate uremic extraskeletal calcification.
JCI Insight. pii: 126467. doi: 10.1172/jci.insight.126467.
Nowak TS Jr, Mulligan MK. Impact of C57BL/6 substrain on sex-dependent differences in mouse stroke models.
Neurochem Int. 2019 Jul;127:12-21. doi: 10.1016/j.neuint.2018.11.011. Epub 2018 Nov 15.
Ohlemiller KK. Mouse methods and models for studies in hearing.
J Acoust Soc Am. 2019 Nov;146(5):3668. doi: 10.1121/1.5132550.
Panneer SK, Arindkar SK, Nagarajan P. Mouse Genetics and Breeding. In: Nagarajan P., Gudde R., Srinivasan R. (eds) Essentials of Laboratory Animal Science: Principles and Practices. Springer, Singapore.
Perry GML. 'Fat's chances': Loci for phenotypic dispersion in plasma leptin in mouse models of diabetes mellitus.
PLoS One. 2019;14(10):e0222654. doi: 10.1371/journal.pone.0222654. Epub 2019 Oct 29.
Pirman T, Lenardič A, Nemec Svete A, Horvat S. Supplementation with Your Iron Syrup Corrects Iron Status in a Mouse Model of Diet-Induced Iron Deficiency.
Biology (Basel). pii: 357. doi: 10.3390/biology10050357.
Ramadhani HF, Kusuma WA, Hasibuan LS, Heryanto R. Association of Single Nucleotide Polymorphism and Phenotypes in Type 2 Diabetes Mellitus Using Genetic Algorithm and CatBoost. 2020 International Conference on Computer Science and Its Application in Agriculture (ICOSICA), pp. 1-6, doi: 10.1109/ICOSICA49951.2020.9243208.
Raza A, Xie Z, Chan EC, Chen WS, Scott LM, Robin Eisch A, Krementsov DN, Rosenberg HF, Parikh SM, Blankenhorn EP, Teuscher C, Druey KM. A natural mouse model reveals genetic determinants of systemic capillary leak syndrome (Clarkson disease).
Commun Biol. 2019;2:398. doi: 10.1038/s42003-019-0647-4. Epub 2019 Oct 31.
Reynolds T, Johnson EC, Huggett SB, Bubier JA, Palmer RHC, Agrawal A, Baker EJ, Chesler EJ. Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration.
Neuropsychopharmacology. 2021 Jan;46(1):86-97. doi: 10.1038/s41386-020-00795-5. Epub 2020 Aug 13.
Ruberte J, Schofield PN, Brakebusch C, Vogel P, Herault Y, Gracia G, McKerlie C, Hrabĕ de Angelis M, Hagn M, Sundberg JP. PATHBIO: an international training program for precision mouse phenotyping.
Mamm Genome. 2020 Feb;31(1-2):49-53. doi: 10.1007/s00335-020-09829-1. Epub 2020 Feb 22.
Rupert JE, Jengelley DHA, Zimmers TA. In Vitro, In Vivo, and In Silico Methods for Assessment of Muscle Size and Muscle Growth Regulation.
Shock. 2020 May;53(5):605-615. doi: 10.1097/SHK.0000000000001498.
Saul MC, Bagley JR, Bailey LS, Datta U, Dickson PE, Dodd R, Gagnon LH, Huggett SB, Kimble VM, Leonardo M, Kim SM, Olson A, Roy T, Schoenrock SA, Wilcox T, Jentsch JD, Logan RW, McClung CA, Palmer RHC, Philip VM, Reinholdt LG, Sukoff Rizzo SJ, Tarantino LM, Chesler EJ. Consideration of genetic and sex effects in mice enhances consilience with human addiction studies. bioRxiv doi: https://doi.org/10.1101/2020.02.14.949784
Saul MC, Philip VM, Reinholdt LG, Center for Systems Neurogenetics of Addiction., Chesler EJ. High-Diversity Mouse Populations for Complex Traits.
Trends Genet. 2019 Jul;35(7):501-514. doi: 10.1016/j.tig.2019.04.003. Epub 2019 May 24.
Scearce-Levie K, Sanchez PE, Lewcock JW. Leveraging preclinical models for the development of Alzheimer disease therapeutics.
Nat Rev Drug Discov. 2020 Jul;19(7):447-462. doi: 10.1038/s41573-020-0065-9. Epub 2020 Apr 8.
Schoenrock SA, Kumar P, Gómez-A A, Dickson PE, Kim SM, Bailey L, Neira S, Riker KD, Farrington J, Gaines CH, Khan S, Wilcox TD, Roy TA, Leonardo MR, Olson AA, Gagnon LH, Philip VM, Valdar W, de Villena FP, Jentsch JD, Logan RW, McClung CA, Robinson DL, Chesler EJ, Tarantino LM. Characterization of genetically complex Collaborative Cross mouse strains that model divergent locomotor activating and reinforcing properties of cocaine.
Psychopharmacology (Berl). 2020 Apr;237(4):979-996. doi: 10.1007/s00213-019-05429-3. Epub 2020 Jan 3.
Seldin M, Yang X, Lusis AJ. Systems genetics applications in metabolism research.
Nat Metab. 2019 Nov;1(11):1038-1050. doi: 10.1038/s42255-019-0132-x. Epub 2019 Oct 21.
Sepulveda-Rodriguez A, Li P, Khan T, Ma JD, Carlone CA, Bozzelli PL, Conant KE, Forcelli PA, Vicini S. Electroconvulsive Shock Enhances Responsive Motility and Purinergic Currents in Microglia in the Mouse Hippocampus.
eNeuro. pii: ENEURO.0056-19.2019. doi: 10.1523/ENEURO.0056-19.2019. Epub 2019 Apr 23.
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, Carbon S, Carmody L, Chan LE, Cipriani V, Cuzick A, Della Rocca M, Dunn N, Essaid S, Fey P, Grove C, Gourdine JP, Hamosh A, Harris M, Helbig I, Hoatlin M, Joachimiak M, Jupp S, Lett KB, Lewis SE, McNamara C, Pendlington ZM, Pilgrim C, Putman T, Ravanmehr V, Reese J, Riggs E, Robb S, Roncaglia P, Seager J, Segerdell E, Similuk M, Storm AL, Thaxon C, Thessen A, Jacobsen JOB, McMurry JA, Groza T, Köhler S, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC, Osumi-Sutherland D. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res. 2020 Jan 8;48(D1):D704-D715. doi: 10.1093/nar/gkz997.
Silver DJ, Roversi GA, Bithi N, Wang SZ, Troike KM, Neumann CK, Ahuja GK, Reizes O, Brown JM, Hine C, Lathia JD. Severe consequences of a high-lipid diet include hydrogen sulfide dysfunction and enhanced aggression in glioblastoma.
J Clin Invest. pii: 138276. doi: 10.1172/JCI138276.
Stýblo M, Douillet C, Bangma J, Eaves LA, de Villena FP, Fry R. Differential metabolism of inorganic arsenic in mice from genetically diverse Collaborative Cross strains.
Arch Toxicol. 2019 Oct;93(10):2811-2822. doi: 10.1007/s00204-019-02559-7. Epub 2019 Sep 6.
Suhr M, Lehmann C, Bauer CR, Bender T, Knopp C, Freckmann L, Öst Hansen B, Henke C, Aschenbrandt G, Kühlborn LK, Rheinländer S, Weber L, Marzec B, Hellkamp M, Wieder P, Sax U, Kusch H, Nussbeck SY. Menoci: lightweight extensible web portal enhancing data management for biomedical research projects.
BMC Bioinformatics. 2020 Dec 17;21(1):582. doi: 10.1186/s12859-020-03928-1.
Suto JI. Genetic analysis of the mandible morphology in DDD.Cg-Ay/Sgn and C57BL/6J inbred mice.
J Genet. pii: 89.
Suto JI, Kojima M. Effects of quantitative trait loci determining testicular weight in DDD/Sgn inbred mice are strongly influenced by circulating testosterone levels.
Asian-Australas J Anim Sci. doi: 10.5713/ajas.18.0783.
Suto JI, Kojima M. Low pup survival rate is associated with maternal Naq3 genotype and hypothalamic Vps8 expression levels in mice.
Congenit Anom (Kyoto). 2021 May;61(3):97-100. doi: 10.1111/cga.12406. Epub 2020 Dec 27.
Svenson KL, Long LL, Ciciotte SL, Adams MD. A mutation in mouse Krüppel-like factor 15 alters the gut microbiome and response to obesogenic diet.
PLoS One. 2019;14(9):e0222536. doi: 10.1371/journal.pone.0222536. Epub 2019 Sep 25.
Swanzey E, O'Connor C, Reinholdt LG. Mouse Genetic Reference Populations: Cellular Platforms for Integrative Systems Genetics.
Trends Genet. 2021 Mar;37(3):251-265. doi: 10.1016/j.tig.2020.09.007. Epub 2020 Sep 30.
Sweeney NW, Gomes CJ, De Armond R, Centuori SM, Parthasarathy S, Martinez JD. Hypoxia Suppresses High Fat Diet-Induced Steatosis And Development Of Hepatic Adenomas.
Hypoxia (Auckl). 2019;7:53-63. doi: 10.2147/HP.S217569. Epub 2019 Oct 21.
Tavolara TE, Niazi MKK, Ginese M, Piedra-Mora C, Gatti DM, Beamer G, Gurcan MN. Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning.
EBioMedicine. 2020 Dec;62:103094. doi: 10.1016/j.ebiom.2020.103094. Epub 2020 Nov 7.
Totten MS, Pierce DM, Erikson KM. The influence of sex and strain on trace element dysregulation in the brain due to diet-induced obesity.
J Trace Elem Med Biol. 2021 Jan;63:126661. doi: 10.1016/j.jtemb.2020.126661. Epub 2020 Sep 30.
Tran Q, Broman KW. Treatment of the X chromosome in mapping multiple quantitative trait loci.
G3 (Bethesda). pii: jkab005. doi: 10.1093/g3journal/jkab005.
Tsai SM, Chu KC, Jiang YJ. Newly identified Gon4l/Udu-interacting proteins implicate novel functions.
Sci Rep. 2020 Aug 26;10(1):14213. doi: 10.1038/s41598-020-70855-9.
Tyler AL, El Kassaby B, Kolishovski G, Emerson J, Wells AE, Matthew Mahoney J, Carter GW. Effects of kinship correction on inflation of genetic interaction statistics in commonly used mouse populations.
G3 (Bethesda). pii: jkab131. doi: 10.1093/g3journal/jkab131.
Tyler AL, Raza A, Krementsov DN, Case LK, Huang R, Ma RZ, Blankenhorn EP, Teuscher C, Mahoney JM. Network-Based Functional Prediction Augments Genetic Association To Predict Candidate Genes for Histamine Hypersensitivity in Mice.
G3 (Bethesda). 2019 Dec 3;9(12):4223-4233. doi: 10.1534/g3.119.400740.
Valenzuela A. Nomenclature: Naming Your Gene-Modified Mouse.
Methods Mol Biol. 2020;2066:149-162. doi: 10.1007/978-1-4939-9837-1_13.
Vo AH, Swaggart KA, Woo A, Gao QQ, Demonbreun AR, Fallon KS, Quattrocelli M, Hadhazy M, Page PGT, Chen Z, Eskin A, Squire K, Nelson SF, McNally EM. Dusp6 is a genetic modifier of growth through enhanced ERK activity.
Hum Mol Genet. 2019 Jan 15;28(2):279-289. doi: 10.1093/hmg/ddy349.
Voelkl B, Altman NS, Forsman A, Forstmeier W, Gurevitch J, Jaric I, Karp NA, Kas MJ, Schielzeth H, Van de Casteele T, Würbel H. Reproducibility of animal research in light of biological variation.
Nat Rev Neurosci. 2020 Jul;21(7):384-393. doi: 10.1038/s41583-020-0313-3. Epub 2020 Jun 2.
von Scheidt M, Zhao Y, de Aguiar Vallim TQ, Che N, Wierer M, Seldin MM, Franzén O, Kurt Z, Pang S, Bongiovanni D, Yamamoto M, Edwards PA, Ruusalepp A, Kovacic JC, Mann M, Björkegren JLM, Lusis AJ, Yang X, Schunkert H. Transcription Factor MAFF (MAF Basic Leucine Zipper Transcription Factor F) Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism.
Circulation. 2021 May 4;143(18):1809-1823. doi: 10.1161/CIRCULATIONAHA.120.050186. Epub 2021 Feb 25.
Wakayama S, Ito D, Kamada Y, Shimazu T, Suzuki T, Nagamatsu A, Araki R, Ishikawa T, Kamimura S, Hirose N, Kazama K, Yang L, Inoue R, Kikuchi Y, Hayashi E, Emura R, Watanabe R, Nagatomo H, Suzuki H, Yamamori T, Tada MN, Osada I, Umehara M, Sano H, Kasahara H, Higashibata A, Yano S, Abe M, Kishigami S, Kohda T, Ooga M, Wakayama T. Evaluating the long-term effect of space radiation on the reproductive normality of mammalian sperm preserved on the International Space Station.
Sci Adv. pii: eabg5554. doi: 10.1126/sciadv.abg5554. Epub 2021 Jun 11.
Wang M, Fang Z, Yoo B, Bejerano G, Peltz G. The effect of population structure on murine genome-wide association studies. bioRxiv doi: https://doi.org/10.1101/2020.09.01.278762.
Wang Y, Deng P, Liu Y, Wu Y, Chen Y, Guo Y, Zhang S, Zheng X, Zhou L, Liu W, Li Q, Lin W, Qi X, Ou G, Wang C, Yuan Q. Alpha-ketoglutarate ameliorates age-related osteoporosis via regulating histone methylations.
Nat Commun. 2020 Nov 5;11(1):5596. doi: 10.1038/s41467-020-19360-1.
Wei SC, Meijers WC, Axelrod ML, Anang NAS, Screever EM, Wescott EC, Johnson DB, Whitley E, Lehmann L, Courand PY, Mancuso JJ, Himmel LE, Lebrun-Vignes B, Wleklinski MJ, Knollmann BC, Srinivasan J, Li Y, Atolagbe OT, Rao X, Zhao Y, Wang J, Ehrlich LIR, Sharma P, Salem JE, Balko JM, Moslehi JJ, Allison JP. A Genetic Mouse Model Recapitulates Immune Checkpoint Inhibitor-Associated Myocarditis and Supports a Mechanism-Based Therapeutic Intervention.
Cancer Discov. 2021 Mar;11(3):614-625. doi: 10.1158/2159-8290.CD-20-0856. Epub 2020 Nov 30.
Wilkinson MJ, Selman C, McLaughlin L, Horan L, Hamilton L, Gilbert C, Chadwick C, Flynn JN. Progressing the care, husbandry and management of ageing mice used in scientific studies.
Lab Anim. 2020 Jun;54(3):225-238. doi: 10.1177/0023677219865291. Epub 2019 Aug 12.
Wolf AM. The caloric restriction fallacy, rodent diet aids and the tumor suppression theory of aging. 2021. OSF Preprints 10.31219/osf.io/a2689.
Wood ZT, Wiegardt AK, Barton KL, Clark JD, Homola JJ, Olsen BJ, King BL, Kovach AI, Kinnison MT. Congruence of genomic and phenotypic differentiation across diverse wild study systems. 2021. Evolutionary Applications doi.org/10.1111/eva.13264.
Xu L, Ma X, Verma N, Perie L, Pendse J, Shamloo S, Marie Josephson A, Wang D, Qiu J, Guo M, Ping X, Allen M, Noguchi A, Springer D, Shen F, Liu C, Zhang S, Li L, Li J, Xiao J, Lu J, Du Z, Luo J, Aleman JO, Leucht P, Mueller E. PPARγ agonists delay age-associated metabolic disease and extend longevity.
Aging Cell. 2020 Nov;19(11):e13267. doi: 10.1111/acel.13267. Epub 2020 Nov 21.
Yang C, Wang Y, Xu W, Liu Z, Zhou S, Zhang M, Cui D. Genome-wide association study using diversity outcross mice identified candidate genes of pancreatic cancer.
Genomics. 2019 Dec;111(6):1882-1888. doi: 10.1016/j.ygeno.2018.12.011. Epub 2018 Dec 20.
Young K, Loberg MA, Eudy E, Schwartz LS, Mujica KD, Trowbridge JJ. Heritable genetic background alters survival and phenotype of Mll-AF9-induced leukemias.
Exp Hematol. 2020 Sep;89:61-67.e3. doi: 10.1016/j.exphem.2020.07.012. Epub 2020 Aug 6.
Yuan R, Musters CJM, Zhu Y, Evans TR, Sun Y, Chesler EJ, Peters LL, Harrison DE, Bartke A. Genetic differences and longevity-related phenotypes influence lifespan and lifespan variation in a sex-specific manner in mice.
Aging Cell. 2020 Nov;19(11):e13263. doi: 10.1111/acel.13263. Epub 2020 Oct 26.
Zacharoff LA, Hamid AA, Engeland WC, Dubinsky JM. Abnormal Recovery from Acute Stress in Huntingtons Disease Mice. 2021. bioRxiv doi: https://doi.org/10.1101/2021.07.21.453245
Zhang N, Czepielewski RS, Jarjour NN, Erlich EC, Esaulova E, Saunders BT, Grover SP, Cleuren AC, Broze GJ, Edelson BT, Mackman N, Zinselmeyer BH, Randolph GJ. Expression of factor V by resident macrophages boosts host defense in the peritoneal cavity.
J Exp Med. 2019 Jun 3;216(6):1291-1300. doi: 10.1084/jem.20182024. Epub 2019 May 2.
Zhao Y, Blencowe M, Shi X, Shu L, Levian C, Ahn IS, Kim SK, Huan T, Levy D, Yang X. Integrative Genomics Analysis Unravels Tissue-Specific Pathways, Networks, and Key Regulators of Blood Pressure Regulation.
Front Cardiovasc Med. 2019;6:21. doi: 10.3389/fcvm.2019.00021. Epub 2019 Mar 12.
Zimmerman H, Yin Z, Zou F, Everett ET. Interfrontal Bone Among Inbred Strains of Mice and QTL Mapping.
Front Genet. 2019;10:291. doi: 10.3389/fgene.2019.00291. Epub 2019 Apr 2.